AcaClone pDRAW32
Freeware DNA cloning, analysis and visualisation software |
AnnHyb - nucleotidic sequence manager
Free software for working with and managing nucleotide sequences in multiple formats. Many features including sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence. |
Artemis: A DNA Sequence Viewer and Annotation Tool
Java program to display a DNA sequence, annotated with features, ORFs. Reads many input formats. |
BioAfrica - genetic data environment (GDE) for Linux download
An integrated linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE) |
Computer Program for Polyphasic Taxonomy Analysis
The proBiosys suite of programs compares phenetic, chemotaxonomic and nucleic acid sequence data. Algorithms for polyphasic taxonomy are available to construct Dendrograms, the suite is simple to use. |
DARWIN
An interactive tool for peptide and nucleotide sequence analysis |
DNA-Star - Lasergene
Commercial sequence analysis and manipulation suite for Windows and Macintosh. |
EMBOSS
The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprieatry systems like GCG. |
Genalysis Genome Analysis Toolkit
Commercial tool for comparing whole genomes or large genetic sequences. Outputs lists of matches and dot-plots and supports web-based BLAST searches. |
GeneRunner for Windows
A fairly old but still very usefull sequence analysis tool for everyday lab use. Formerly a commercial product - now "abandonware" |
Linux Software Encyclopedia - Bioinformatics
Links to Bioinformatics software for Linux. From the Linux Software Encyclopedia. |
Meta-MEME v2.0.1
Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the Univ. of California-San Diego. |
Molecular Evolutionary Genetics Analysis (MEGA2) software
Provides free downloadable MEGA2 software for use in comparative sequence analysis of genetic data. Program for Win32 platforms. |
NCBI BLAST
BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. |
PHRED - Base-Calling Software with Quality Information
A widely-used program for calling DNA sequence bases from sequencer trace files. |
Phred/Phrap/Consed System Home Page
basecaller / assembler / sequencer finisher and related tools from the UW Genome Center. |
PREMIER Biosoft International
Makers of Primer Premier PCR primer design software, Plasmid Premier plasmid vector map drawing software, and Array Designer cDNA microarray software. |
PubCrawler - An Update Alerting Service for PubMed and GenBank
Software and an online service for periodically performing predefined searches at NCBI, reporting new results by email or on the web. |
Sight: Extendable parallel system for automatic genome analysis
Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Has features for converting between naming systems, sequence retrieval, E-PCR, gene prediction, similarity |
slcview
slcview is an open source program which allows automated generation of high quality clustergrams and tree images from .cdt files. |
Software for Life Science Discovery
geneticXchange provides powerful software for enterprise-level data integration and desktop biologists. |
The Sanger Centre: Software
Production software used at the Sanger Centre, physical mapping software, informatics and analysis software, and data formats |
VectorNTI
Commercial software suite for analysis and manipulation of DNA and protein sequences |
WU-BLAST Archives
WU-BLAST: The Washington University BLAST. "...faster at any sensitivity, more sensitive at any speed, the first BLAST with gapped alignments and statistics." |
www.COMPBIO.net
Source code and research papers in computational biology. Includes downloadable Visualize molecule visualisation software which supports PDB and DAS files. |
XDigitize
A visualization software system for evaluation of hybridisation experiments. |
